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  • Coded warehouse
  • Amino acid composition
  • Total nucleotide composition
  • Gene nucleotide composition
  • Coded Indices
  • Dependence of nucleotides on the index
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All nuclides in the genes


Nucleotides in the first position


Nucleotides in the second position


Nucleotides in the third position


Frequency of codon usage based on the entire genome


Frequency of codon usage based on ribosomal genes


The frequency of codon usage is calculated on the basis of the genes in which all codons are present


All variants of the CAI calculation


CAI_A and nucleotides in the genes


CAI_A nucleotides in the first position


CAI_A nucleotides in the second position


CAI_A nucleotides in third position

Codon Any value Present Missing Presence in the number [0;100]%
AAA ;
AAT ;
AAG ;
AAC ;
ATA ;
ATT ;
ATG ;
ATC ;
AGA ;
AGT ;
AGG ;
AGC ;
ACA ;
ACT ;
ACG ;
ACC ;
TAA ;
TAT ;
TAG ;
TAC ;
TTA ;
TTT ;
TTG ;
TTC ;
TGA ;
TGT ;
TGG ;
TGC ;
TCA ;
TCT ;
TCG ;
TCC ;
GAA ;
GAT ;
GAG ;
GAC ;
GTA ;
GTT ;
GTG ;
GTC ;
GGA ;
GGT ;
GGG ;
GGC ;
GCA ;
GCT ;
GCG ;
GCC ;
CAA ;
CAT ;
CAG ;
CAC ;
CTA ;
CTT ;
CTG ;
CTC ;
CGA ;
CGT ;
CGG ;
CGC ;
CCA ;
CCT ;
CCG ;
CCC ;

Amino Acid Any value Present Missing Presence in the number [0;100]%
Ala ;
Arg ;
Asn ;
Asp ;
Cys ;
Gln ;
Glu ;
Gly ;
His ;
Ile ;
Leu ;
Lys ;
Met ;
Phe ;
Pro ;
Ser ;
Thr ;
Trp ;
Tyr ;
Val ;

Nucleotide Any value Present Missing Presence in the number [0;100]%
A ;
T ;
G ;
C ;
A_1 ;
T_1 ;
G_1 ;
C_1 ;
A_2 ;
T_2 ;
G_2 ;
C_2 ;
A_3 ;
T_3 ;
G_3 ;
C_3 ;

Index Any value
CAI_A ;
CAI_R ;
CAI_T ;

The size of the gene (nucleotides) [n;m]
;